Variant report

Variant	rs1541067
Chromosome Location	chr20:16276984-16276985
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1360212	0.96[ASN][1000 genomes]
rs6034446	0.85[JPT][hapmap]
rs6034458	0.90[CHB][hapmap]
rs6034459	0.90[CHB][hapmap]
rs6075045	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6111020	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6111021	0.85[JPT][hapmap]
rs6111022	0.86[JPT][hapmap]
rs6111026	0.91[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6111027	0.87[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6111028	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6111029	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6514670	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6514671	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16247600-16290800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr20:16248600-16291400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr20:16249200-16277400	Weak transcription	Brain Substantia Nigra	brain
4	chr20:16252000-16289400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr20:16252400-16283000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr20:16253000-16277800	Weak transcription	Brain Angular Gyrus	brain
7	chr20:16254000-16278800	Weak transcription	Adipose Nuclei	Adipose
8	chr20:16254000-16281400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr20:16254000-16290800	Weak transcription	Esophagus	oesophagus
10	chr20:16254000-16298400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr20:16254200-16278600	Weak transcription	Pancreas	Pancrea
12	chr20:16254200-16284200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr20:16255400-16283000	Weak transcription	Fetal Lung	lung
14	chr20:16262600-16285400	Weak transcription	Ovary	ovary
15	chr20:16262600-16346200	Weak transcription	Gastric	stomach
16	chr20:16263600-16277200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr20:16264400-16281600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr20:16264600-16284000	Weak transcription	Aorta	Aorta
19	chr20:16264800-16290800	Weak transcription	Lung	lung
20	chr20:16265000-16283800	Weak transcription	Primary B cells from cord blood	blood
21	chr20:16265000-16289000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr20:16265200-16281200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr20:16265200-16282600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr20:16265600-16280600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr20:16265600-16281400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr20:16265600-16281600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr20:16265600-16282000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr20:16265600-16282000	Weak transcription	Fetal Intestine Small	intestine
29	chr20:16265600-16282800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr20:16265600-16284200	Weak transcription	Left Ventricle	heart
31	chr20:16265800-16282200	Weak transcription	Psoas Muscle	Psoas
32	chr20:16265800-16289200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr20:16268800-16277400	Weak transcription	Fetal Muscle Leg	muscle
34	chr20:16270800-16302400	Weak transcription	Brain Hippocampus Middle	brain
35	chr20:16271400-16277600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr20:16271600-16280200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr20:16274400-16277000	Enhancers	HepG2	liver
38	chr20:16275400-16278400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr20:16276400-16277200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr20:16276400-16277800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr20:16276400-16348200	Weak transcription	Colon Smooth Muscle	Colon

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