Variant report

Variant	rs6111022
Chromosome Location	chr20:16273933-16273934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16264271..16267069-chr20:16272916..16274482,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1541067	0.86[JPT][hapmap]
rs4814474	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6034446	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6080212	0.82[JPT][hapmap]
rs6080214	0.82[JPT][hapmap]
rs6111020	0.85[JPT][hapmap]
rs6111021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7274075	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs928145	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16242400-16275000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:16247600-16290800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr20:16248600-16291400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:16249200-16277400	Weak transcription	Brain Substantia Nigra	brain
5	chr20:16252000-16289400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr20:16252400-16283000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr20:16253000-16277800	Weak transcription	Brain Angular Gyrus	brain
8	chr20:16254000-16278800	Weak transcription	Adipose Nuclei	Adipose
9	chr20:16254000-16281400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr20:16254000-16290800	Weak transcription	Esophagus	oesophagus
11	chr20:16254000-16298400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr20:16254200-16278600	Weak transcription	Pancreas	Pancrea
13	chr20:16254200-16284200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr20:16255400-16283000	Weak transcription	Fetal Lung	lung
15	chr20:16262600-16285400	Weak transcription	Ovary	ovary
16	chr20:16262600-16346200	Weak transcription	Gastric	stomach
17	chr20:16263600-16277200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr20:16264400-16281600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr20:16264600-16284000	Weak transcription	Aorta	Aorta
20	chr20:16264800-16290800	Weak transcription	Lung	lung
21	chr20:16265000-16283800	Weak transcription	Primary B cells from cord blood	blood
22	chr20:16265000-16289000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr20:16265200-16281200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr20:16265200-16282600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr20:16265600-16280600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr20:16265600-16281400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr20:16265600-16281600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr20:16265600-16282000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr20:16265600-16282000	Weak transcription	Fetal Intestine Small	intestine
30	chr20:16265600-16282800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr20:16265600-16284200	Weak transcription	Left Ventricle	heart
32	chr20:16265800-16282200	Weak transcription	Psoas Muscle	Psoas
33	chr20:16265800-16289200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr20:16268800-16277400	Weak transcription	Fetal Muscle Leg	muscle
35	chr20:16270800-16275800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr20:16270800-16302400	Weak transcription	Brain Hippocampus Middle	brain
37	chr20:16271400-16274400	Weak transcription	HepG2	liver
38	chr20:16271400-16277600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr20:16271600-16280200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr20:16272000-16274400	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr20:16272200-16275000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr20:16272400-16274400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr20:16273000-16274000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr20:16273000-16274000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr20:16273200-16274400	Enhancers	HMEC	breast
46	chr20:16273200-16275000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr20:16273200-16275200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr20:16273200-16275400	Enhancers	A549	lung

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