Variant report

Variant	rs154168
Chromosome Location	chr5:107051082-107051083
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12656808	0.82[EUR][1000 genomes]
rs12657205	0.82[EUR][1000 genomes]
rs13171805	0.82[EUR][1000 genomes]
rs13189126	0.82[EUR][1000 genomes]
rs1388133	0.82[EUR][1000 genomes]
rs1455527	0.80[EUR][1000 genomes]
rs1490839	0.80[EUR][1000 genomes]
rs154165	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs154167	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17430751	0.82[EUR][1000 genomes]
rs4957710	0.80[EUR][1000 genomes]
rs4957711	0.82[EUR][1000 genomes]
rs6863281	0.81[EUR][1000 genomes]
rs6891467	0.82[EUR][1000 genomes]
rs723799	0.82[EUR][1000 genomes]
rs7446408	0.82[EUR][1000 genomes]
rs7708158	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107050200-107052200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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