Variant report

Variant	rs6891467
Chromosome Location	chr5:107041350-107041351
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10045032	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11960012	0.87[ASN][1000 genomes]
rs12656808	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12657205	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12658128	0.87[ASN][1000 genomes]
rs12658772	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12659199	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1304902	0.87[ASN][1000 genomes]
rs13160949	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171567	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13171805	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13188836	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13189126	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388133	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455527	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490827	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1490839	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154168	0.82[EUR][1000 genomes]
rs1559245	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1586728	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1602386	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17430751	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1823993	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1826239	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1835981	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1855614	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1895414	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4957706	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4957708	0.86[ASN][1000 genomes]
rs4957709	0.88[ASN][1000 genomes]
rs4957710	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4957711	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357894	0.85[ASN][1000 genomes]
rs6596745	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6596746	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6863281	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6864800	0.91[ASN][1000 genomes]
rs723799	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73200667	0.85[ASN][1000 genomes]
rs7349802	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7349825	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7446408	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708158	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7715219	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7727931	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7732343	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs873136	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs923622	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9765172	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107032400-107049000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:107038000-107041400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107040400-107041600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:107040400-107041600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:107040400-107041800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:107040600-107041400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:107040600-107041400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
8	chr5:107040600-107041400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:107040600-107041400	Active TSS	Brain Anterior Caudate	brain
10	chr5:107040600-107041400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:107040600-107041400	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr5:107040600-107041400	Enhancers	HMEC	breast
13	chr5:107040600-107041400	Flanking Active TSS	HUVEC	blood vessel
14	chr5:107040600-107041400	Flanking Active TSS	NHDF-Ad	bronchial
15	chr5:107040600-107041400	Flanking Active TSS	Osteobl	bone
16	chr5:107040600-107041600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:107040600-107041600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr5:107040600-107041600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:107040600-107041600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:107040600-107041800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr5:107040600-107041800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr5:107040600-107041800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr5:107040800-107041400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:107040800-107041400	Active TSS	Brain Substantia Nigra	brain
25	chr5:107040800-107041400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
26	chr5:107040800-107041400	Flanking Active TSS	NH-A	brain
27	chr5:107040800-107041600	Enhancers	HSMM	muscle
28	chr5:107040800-107041800	Enhancers	NHEK	skin
29	chr5:107041000-107041400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr5:107041000-107041400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
31	chr5:107041000-107041400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr5:107041000-107041400	Active TSS	Adipose Nuclei	Adipose
33	chr5:107041200-107041400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr5:107041200-107041400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr5:107041200-107041400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr5:107041200-107041400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr5:107041200-107041400	Flanking Active TSS	NHLF	lung
38	chr5:107041200-107041600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:107041200-107041600	Enhancers	Brain Germinal Matrix	brain
40	chr5:107041200-107041600	Enhancers	Fetal Brain Male	brain

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