Variant report

Variant	rs1835981
Chromosome Location	chr5:107047091-107047092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10045032	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12656808	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12657205	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12658772	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12659199	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13160949	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13171567	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13171805	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13188836	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13189126	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1388133	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1455527	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1490827	0.83[EUR][1000 genomes]
rs1490839	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1559245	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1586728	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1602386	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17430751	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1823993	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1826239	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1855614	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1895414	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4957706	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4957710	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4957711	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6596745	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6596746	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6863281	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6864800	0.89[ASN][1000 genomes]
rs6891467	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs723799	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7349802	0.84[EUR][1000 genomes]
rs7349825	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7446408	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7708158	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7715219	0.84[EUR][1000 genomes]
rs7727931	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7732343	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs873136	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs923622	0.82[EUR][1000 genomes]
rs9765172	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107032400-107049000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:107041600-107049000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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