Variant report
| Variant | rs6864800 |
|---|---|
| Chromosome Location | chr5:107046317-107046318 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs12656808 | 0.98[ASN][1000 genomes] |
| rs12657205 | 0.98[ASN][1000 genomes] |
| rs12658772 | 0.92[ASN][1000 genomes] |
| rs12659199 | 0.88[ASN][1000 genomes] |
| rs13160949 | 0.91[ASN][1000 genomes] |
| rs13171567 | 0.88[ASN][1000 genomes] |
| rs13171805 | 0.92[ASN][1000 genomes] |
| rs13188836 | 0.88[ASN][1000 genomes] |
| rs13189126 | 0.91[ASN][1000 genomes] |
| rs1388133 | 0.91[ASN][1000 genomes] |
| rs1455527 | 0.91[ASN][1000 genomes] |
| rs1490827 | 0.82[CHD][hapmap];0.88[JPT][hapmap] |
| rs1490839 | 0.91[ASN][1000 genomes] |
| rs1586728 | 0.89[ASN][1000 genomes] |
| rs1602386 | 0.88[ASN][1000 genomes] |
| rs17430751 | 0.92[ASN][1000 genomes] |
| rs1823993 | 0.88[ASN][1000 genomes] |
| rs1826239 | 0.89[ASN][1000 genomes] |
| rs1835981 | 0.89[ASN][1000 genomes] |
| rs1855614 | 0.87[ASN][1000 genomes] |
| rs1895414 | 0.88[ASN][1000 genomes] |
| rs4957706 | 0.86[ASN][1000 genomes] |
| rs4957708 | 0.82[ASN][1000 genomes] |
| rs4957710 | 0.90[ASN][1000 genomes] |
| rs4957711 | 0.91[ASN][1000 genomes] |
| rs6596745 | 0.88[ASN][1000 genomes] |
| rs6596746 | 0.90[ASN][1000 genomes] |
| rs6863281 | 0.97[ASN][1000 genomes] |
| rs6877460 | 0.83[ASN][1000 genomes] |
| rs6891467 | 0.91[ASN][1000 genomes] |
| rs723799 | 0.92[ASN][1000 genomes] |
| rs7349802 | 0.86[ASN][1000 genomes] |
| rs7349825 | 0.88[ASN][1000 genomes] |
| rs7446408 | 0.91[ASN][1000 genomes] |
| rs7708158 | 0.97[ASN][1000 genomes] |
| rs7715219 | 0.86[ASN][1000 genomes] |
| rs7727931 | 0.88[ASN][1000 genomes] |
| rs7732343 | 0.89[ASN][1000 genomes] |
| rs873136 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34018 | chr5:106720912-107110506 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | esv3362504 | chr5:107044478-107047026 | Weak transcription ZNF genes & repeats | lncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3441686 | chr5:107044728-107046951 | Weak transcription ZNF genes & repeats | lncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:107032400-107049000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 2 | chr5:107041600-107049000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
