Variant report

Variant	rs13160949
Chromosome Location	chr5:107032339-107032340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107016859..107019087-chr5:107031828..107034099,2	MCF-7	breast:
2	chr5:107023431..107026443-chr5:107031056..107034359,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10045032	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11960012	0.87[ASN][1000 genomes]
rs12656808	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12657205	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12658128	0.87[ASN][1000 genomes]
rs12658772	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12659199	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1304902	0.87[ASN][1000 genomes]
rs13171567	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13171805	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13188836	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13189126	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388133	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455527	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490827	0.96[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1490839	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1559245	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1586728	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1602386	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17430751	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1823993	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1826239	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1835981	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1855614	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1895414	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4957706	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4957708	0.86[ASN][1000 genomes]
rs4957709	0.88[ASN][1000 genomes]
rs4957710	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4957711	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357894	0.85[ASN][1000 genomes]
rs6596745	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6596746	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6863281	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6864800	0.91[ASN][1000 genomes]
rs6891467	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723799	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73200667	0.85[ASN][1000 genomes]
rs7349802	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7349825	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7446408	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708158	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7715219	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7727931	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7732343	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs873136	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs923622	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9765172	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107031200-107032600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:107031400-107032800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:107031600-107032400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr5:107031600-107032400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:107031600-107032400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:107031600-107032600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:107031600-107032800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr5:107031600-107033000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:107031800-107032400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:107031800-107032400	Enhancers	Fetal Brain Male	brain
11	chr5:107031800-107032600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:107031800-107032800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:107032000-107032400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr5:107032000-107032400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr5:107032000-107032400	Active TSS	Brain Anterior Caudate	brain
16	chr5:107032000-107032800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:107032200-107032600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr5:107032200-107032600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:107032200-107032600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:107032200-107032600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr5:107032200-107032800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr5:107032200-107033000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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