Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12656808	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12657205	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12658772	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13160949	0.87[EUR][1000 genomes]
rs13171805	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13189126	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1388133	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1455527	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1490839	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17430751	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1835981	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1855614	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4957710	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4957711	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6596746	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6863281	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6891467	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs723799	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7446408	0.90[EUR][1000 genomes]
rs7708158	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3362504	chr5:107044478-107047026	Weak transcription ZNF genes & repeats	lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3441686	chr5:107044728-107046951	Weak transcription ZNF genes & repeats	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107032400-107049000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:107041600-107049000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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