Variant report

Variant	rs4957709
Chromosome Location	chr5:107033906-107033907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107016859..107019087-chr5:107031828..107034099,2	MCF-7	breast:
2	chr5:107023431..107026443-chr5:107031056..107034359,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10045032	0.84[ASN][1000 genomes]
rs11960012	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12656808	0.82[ASN][1000 genomes]
rs12657205	0.82[ASN][1000 genomes]
rs12658128	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12658772	0.87[ASN][1000 genomes]
rs12659199	0.85[ASN][1000 genomes]
rs1304902	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13160949	0.88[ASN][1000 genomes]
rs13171567	0.85[ASN][1000 genomes]
rs13171805	0.87[ASN][1000 genomes]
rs13188836	0.85[ASN][1000 genomes]
rs13189126	0.88[ASN][1000 genomes]
rs1388133	0.88[ASN][1000 genomes]
rs1455527	0.88[ASN][1000 genomes]
rs1490827	0.94[JPT][hapmap]
rs1490839	0.88[ASN][1000 genomes]
rs1559245	0.82[ASN][1000 genomes]
rs1586728	0.86[ASN][1000 genomes]
rs1602386	0.85[ASN][1000 genomes]
rs17430751	0.87[ASN][1000 genomes]
rs1823993	0.85[ASN][1000 genomes]
rs1826239	0.86[ASN][1000 genomes]
rs1895414	0.85[ASN][1000 genomes]
rs4957706	0.83[ASN][1000 genomes]
rs4957708	0.95[ASN][1000 genomes]
rs4957710	0.89[ASN][1000 genomes]
rs4957711	0.88[ASN][1000 genomes]
rs56201232	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62357894	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6596745	0.85[ASN][1000 genomes]
rs6596746	0.87[ASN][1000 genomes]
rs6863281	0.82[ASN][1000 genomes]
rs6891467	0.88[ASN][1000 genomes]
rs723799	0.87[ASN][1000 genomes]
rs73200667	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7349802	0.87[ASN][1000 genomes]
rs7349825	0.85[ASN][1000 genomes]
rs7446408	0.88[ASN][1000 genomes]
rs7708158	0.83[ASN][1000 genomes]
rs7715219	0.84[ASN][1000 genomes]
rs7727931	0.85[ASN][1000 genomes]
rs7732343	0.86[ASN][1000 genomes]
rs873136	0.85[ASN][1000 genomes]
rs923622	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107032400-107049000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:107032800-107035000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:107032800-107037800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:107032800-107040600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:107033000-107040600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:107033600-107038000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:107033800-107034000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:107033800-107034200	Enhancers	Muscle Satellite Cultured Cells	--

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