Variant report

Variant	rs1541773
Chromosome Location	chr13:88723479-88723480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK5-15	chr13:88723458-88723617	NONHSAT034607

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1333794	0.83[ASN][1000 genomes]
rs1333795	0.83[ASN][1000 genomes]
rs1333796	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1333797	0.83[ASN][1000 genomes]
rs1333801	0.83[ASN][1000 genomes]
rs1529361	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1541772	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1855390	0.88[ASN][1000 genomes]
rs1855391	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1855392	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2346339	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4142406	0.83[ASN][1000 genomes]
rs4772600	0.86[ASN][1000 genomes]
rs4772625	0.83[ASN][1000 genomes]
rs4772631	0.80[ASN][1000 genomes]
rs61959190	0.83[ASN][1000 genomes]
rs7319127	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7992532	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7999115	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9284218	0.83[ASN][1000 genomes]
rs9284219	0.83[ASN][1000 genomes]
rs9300906	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9300944	0.84[ASN][1000 genomes]
rs9300946	0.85[ASN][1000 genomes]
rs9514240	0.84[ASN][1000 genomes]
rs9514256	0.86[ASN][1000 genomes]
rs9519267	0.85[ASN][1000 genomes]
rs9519269	0.84[ASN][1000 genomes]
rs9519309	0.87[ASN][1000 genomes]
rs9519311	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9519321	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9519322	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9519323	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9519324	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9558267	0.83[ASN][1000 genomes]
rs9558268	0.83[ASN][1000 genomes]
rs9558328	0.85[ASN][1000 genomes]
rs9558329	0.84[ASN][1000 genomes]
rs9558380	0.88[ASN][1000 genomes]
rs9558381	0.83[ASN][1000 genomes]
rs9558397	0.83[ASN][1000 genomes]
rs9586474	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900790	chr13:88585928-88891870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900791	chr13:88623302-88771495	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900792	chr13:88623302-88871759	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900793	chr13:88711960-88871759	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88721400-88723800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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