Variant report

Variant	rs4142406
Chromosome Location	chr13:88755711-88755712
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1333794	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1333795	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1333796	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1333797	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1333801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529361	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1541772	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1541773	0.83[ASN][1000 genomes]
rs1831882	0.84[JPT][hapmap]
rs1855390	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1855391	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1855392	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2346339	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2346340	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4772584	0.83[ASN][1000 genomes]
rs4772600	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4772625	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4772631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61959190	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7319127	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7339189	0.84[JPT][hapmap]
rs7992532	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7999115	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9284218	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9284219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300906	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9300944	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9300946	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9514240	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9514256	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9519267	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9519269	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9519309	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9519311	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9519321	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9519322	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9519323	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9519324	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9558267	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9558268	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9558328	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9558329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9558380	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9558381	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9558397	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9586474	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900790	chr13:88585928-88891870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900791	chr13:88623302-88771495	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900792	chr13:88623302-88871759	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900793	chr13:88711960-88871759	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv983762	chr13:88726553-88757094	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv1037729	chr13:88728499-89127873	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv541864	chr13:88728499-89127873	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88755200-88756600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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