Variant report

Variant	rs1543573
Chromosome Location	chr6:11969531-11969532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11966269..11970218-chr6:11973328..11977432,3	K562	blood:
2	chr6:11966998..11969837-chr6:12006330..12008967,3	K562	blood:
3	chr6:11964811..11966583-chr6:11966966..11969534,2	MCF-7	breast:
4	chr6:11963212..11964743-chr6:11967263..11969893,2	K562	blood:
5	chr6:11942682..11944906-chr6:11968224..11970350,2	K562	blood:
6	chr6:11969121..11970622-chr6:12013572..12016393,2	K562	blood:

Variant related genes	Relation type
ENSG00000229896	Chromatin interaction
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12213920	0.83[EUR][1000 genomes]
rs1543574	1.00[CEU][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711507	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6922048	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7751442	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs913020	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs913022	0.85[AFR][1000 genomes]
rs9380689	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9380700	0.83[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11961400-11972600	Weak transcription	Lung	lung
2	chr6:11966000-11971400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:11966000-11972400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:11968000-11969600	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:11968200-11969800	Enhancers	Primary B cells from cord blood	blood
6	chr6:11968400-11969600	Enhancers	Fetal Heart	heart
7	chr6:11968400-11970000	Enhancers	NHDF-Ad	bronchial
8	chr6:11968600-11969600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:11968600-11969600	Flanking Active TSS	K562	blood
10	chr6:11968600-11969800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:11968600-11970000	Enhancers	Left Ventricle	heart
12	chr6:11968600-11971000	Weak transcription	HSMM	muscle
13	chr6:11968800-11969600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:11968800-11969800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:11968800-11969800	Enhancers	HSMMtube	muscle
16	chr6:11969000-11969600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:11969000-11969800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:11969000-11969800	Flanking Active TSS	Osteobl	bone
19	chr6:11969000-11970000	Enhancers	NH-A	brain
20	chr6:11969200-11969600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:11969200-11969600	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr6:11969200-11969600	Enhancers	Aorta	Aorta
23	chr6:11969200-11969600	Enhancers	Brain Anterior Caudate	brain
24	chr6:11969200-11969600	Enhancers	Psoas Muscle	Psoas
25	chr6:11969200-11969600	Active TSS	Stomach Smooth Muscle	stomach
26	chr6:11969200-11969800	Active TSS	Right Atrium	heart
27	chr6:11969400-11969600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:11969400-11969600	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr6:11969400-11969600	Active TSS	Ovary	ovary
30	chr6:11969400-11969800	Active TSS	NHLF	lung
31	chr6:11969400-11970400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:11969400-11970400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:11969400-11970600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:11969400-11971600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:11969400-11972200	Weak transcription	GM12878-XiMat	blood
36	chr6:11969400-11974200	Weak transcription	NHEK	skin
37	chr6:11969400-11975400	Weak transcription	Primary hematopoietic stem cells	blood

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