Variant report

Variant	rs913020
Chromosome Location	chr6:11973611-11973612
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11966269..11970218-chr6:11973328..11977432,3	K562	blood:
2	chr6:11972074..11974457-chr6:11977774..11979733,2	K562	blood:
3	chr6:11972074..11974829-chr6:11976477..11980187,3	K562	blood:
4	chr6:11970246..11972167-chr6:11973565..11976424,2	K562	blood:
5	chr6:11963924..11965600-chr6:11970597..11974776,3	K562	blood:
6	chr6:11972148..11974706-chr6:11988027..11990430,2	K562	blood:
7	chr6:11959092..11961876-chr6:11972150..11975452,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12213920	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1409288	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1543573	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1543574	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2031595	0.97[ASN][1000 genomes]
rs2327463	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4711507	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6457997	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6921878	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6922048	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6925772	0.86[LWK][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap]
rs7749829	0.97[ASN][1000 genomes]
rs7751442	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs913022	0.95[ASN][1000 genomes]
rs9349054	0.83[MEX][hapmap]
rs9369021	0.85[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9380689	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380700	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9380702	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs913020	HIVEP1	cis	cerebellum	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11969400-11974200	Weak transcription	NHEK	skin
2	chr6:11969400-11975400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:11969600-11975400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:11969600-11975800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:11969800-11975400	Enhancers	Osteobl	bone
6	chr6:11970400-11975000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:11970400-11975400	Enhancers	NH-A	brain
8	chr6:11970600-11974400	Enhancers	NHDF-Ad	bronchial
9	chr6:11970800-11975200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:11972000-11974000	Weak transcription	HSMM	muscle
11	chr6:11972200-11974600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:11972400-11974000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:11972400-11974000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:11972400-11974000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:11972400-11974000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:11972400-11974200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr6:11972400-11974200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:11972400-11975400	Enhancers	Fetal Heart	heart
19	chr6:11972600-11975000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:11972600-11975200	Enhancers	HSMMtube	muscle
21	chr6:11973000-11975000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:11973000-11975200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:11973200-11973800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:11973200-11974200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:11973200-11975200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:11973200-11975400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:11973200-11980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:11973400-11973800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:11973400-11974000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr6:11973600-11973800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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