Variant report

Variant	rs6921878
Chromosome Location	chr6:11999293-11999294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12213920	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409288	0.93[ASN][1000 genomes]
rs1574166	0.82[AMR][1000 genomes]
rs2031595	0.96[ASN][1000 genomes]
rs2327463	0.93[ASN][1000 genomes]
rs4711507	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6457997	0.93[ASN][1000 genomes]
rs7749829	0.96[ASN][1000 genomes]
rs7751442	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs913020	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs913022	0.92[ASN][1000 genomes]
rs9369021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380689	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9380700	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380702	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11990800-12007200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:11995400-11999400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:11995600-12001400	Weak transcription	K562	blood
4	chr6:11995600-12007800	Weak transcription	Hela-S3	cervix
5	chr6:11998400-11999600	Enhancers	Liver	Liver
6	chr6:11998400-12007800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:11999200-11999400	Enhancers	Fetal Muscle Leg	muscle
8	chr6:11999200-11999400	Enhancers	Psoas Muscle	Psoas
9	chr6:11999200-11999600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:11999200-11999600	Enhancers	Placenta	Placenta
11	chr6:11999200-12000000	Flanking Active TSS	Fetal Heart	heart
12	chr6:11999200-12000000	Enhancers	Osteobl	bone
13	chr6:11999200-12000800	Enhancers	HSMMtube	muscle
14	chr6:11999200-12002000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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