Variant report

Variant	rs6457997
Chromosome Location	chr6:11974582-11974583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11966269..11970218-chr6:11973328..11977432,3	K562	blood:
2	chr6:11925920..11928166-chr6:11973706..11976576,2	K562	blood:
3	chr6:11972074..11974829-chr6:11976477..11980187,3	K562	blood:
4	chr6:11970246..11972167-chr6:11973565..11976424,2	K562	blood:
5	chr6:11963924..11965600-chr6:11970597..11974776,3	K562	blood:
6	chr6:11972148..11974706-chr6:11988027..11990430,2	K562	blood:
7	chr6:11959092..11961876-chr6:11972150..11975452,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12213920	0.93[ASN][1000 genomes]
rs1409288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031595	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2327463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711507	0.96[ASN][1000 genomes]
rs6921878	0.93[ASN][1000 genomes]
rs7749829	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7751442	0.96[ASN][1000 genomes]
rs913020	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs913022	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9369021	0.85[CHB][hapmap];0.92[ASN][1000 genomes]
rs9380689	0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs9380700	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs9380702	0.93[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11969400-11975400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:11969600-11975400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:11969600-11975800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:11969800-11975400	Enhancers	Osteobl	bone
5	chr6:11970400-11975000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:11970400-11975400	Enhancers	NH-A	brain
7	chr6:11970800-11975200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:11972200-11974600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:11972400-11975400	Enhancers	Fetal Heart	heart
10	chr6:11972600-11975000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:11972600-11975200	Enhancers	HSMMtube	muscle
12	chr6:11973000-11975000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:11973000-11975200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:11973200-11975200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:11973200-11975400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:11973200-11980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:11973800-11975000	Weak transcription	K562	blood
18	chr6:11973800-11975200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:11973800-11975200	Enhancers	Hela-S3	cervix
20	chr6:11974000-11974800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:11974000-11975000	Enhancers	HSMM	muscle
22	chr6:11974200-11974800	Enhancers	NHEK	skin

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