Variant report

Variant	rs1543710
Chromosome Location	chr9:101752291-101752292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101748657..101752493-chr9:101836719..101838715,3	K562	blood:
2	chr9:101751401..101755112-chr9:101755767..101760642,5	MCF-7	breast:
3	chr9:101750729..101753162-chr9:101895041..101897883,2	MCF-7	breast:
4	chr9:101749508..101753145-chr9:101836719..101839131,3	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10988701	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101737800-101760800	Weak transcription	Gastric	stomach
2	chr9:101740400-101753400	Weak transcription	Spleen	Spleen
3	chr9:101740400-101756800	Weak transcription	Ovary	ovary
4	chr9:101742800-101754200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:101746800-101754400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:101749000-101752600	Enhancers	Colon Smooth Muscle	Colon
7	chr9:101749000-101753200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:101749200-101753000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:101749200-101753000	Genic enhancers	Adipose Nuclei	Adipose
10	chr9:101749200-101753000	Enhancers	Right Atrium	heart
11	chr9:101749200-101753000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr9:101749200-101753200	Enhancers	Right Ventricle	heart
13	chr9:101749400-101752800	Enhancers	Aorta	Aorta
14	chr9:101749400-101753000	Enhancers	NHDF-Ad	bronchial
15	chr9:101749600-101753000	Enhancers	NHLF	lung
16	chr9:101749800-101753400	Enhancers	HSMM	muscle
17	chr9:101750000-101753600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:101750200-101755200	Weak transcription	Brain Substantia Nigra	brain
19	chr9:101750400-101753000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:101750400-101753200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:101750400-101754400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:101750600-101753000	Enhancers	HSMMtube	muscle
23	chr9:101750600-101753000	Enhancers	Osteobl	bone
24	chr9:101750600-101753200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:101750800-101752800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr9:101750800-101752800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr9:101751000-101752600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr9:101751200-101752800	Enhancers	Fetal Heart	heart
29	chr9:101751200-101753000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:101751200-101753000	Enhancers	Left Ventricle	heart
31	chr9:101751400-101752400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr9:101751400-101752400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr9:101751400-101753000	Genic enhancers	Fetal Muscle Trunk	muscle
34	chr9:101751400-101753000	Genic enhancers	Stomach Smooth Muscle	stomach
35	chr9:101751400-101753200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
36	chr9:101751600-101752400	Weak transcription	Colonic Mucosa	Colon
37	chr9:101751600-101752400	Weak transcription	Psoas Muscle	Psoas
38	chr9:101751600-101752600	Enhancers	Stomach Mucosa	stomach
39	chr9:101751600-101752800	Enhancers	A549	lung
40	chr9:101751600-101753000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:101751600-101753000	Enhancers	Hela-S3	cervix
42	chr9:101751800-101752400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr9:101751800-101752400	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr9:101751800-101752600	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr9:101751800-101753000	Genic enhancers	Pancreas	Pancrea
46	chr9:101751800-101753000	Enhancers	NH-A	brain
47	chr9:101751800-101753200	Enhancers	Placenta Amnion	Placenta Amnion
48	chr9:101751800-101755200	Strong transcription	Fetal Muscle Leg	muscle
49	chr9:101752000-101752400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr9:101752000-101752400	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links