Variant report

Variant	rs10988701
Chromosome Location	chr9:101852790-101852791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1543710	1.00[EUR][1000 genomes]
rs186631	1.00[ASN][1000 genomes]
rs35055733	1.00[ASN][1000 genomes]
rs59092690	1.00[ASN][1000 genomes]
rs72739289	1.00[AFR][1000 genomes]
rs7874849	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101840000-101853800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr9:101846200-101858800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:101848600-101853400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr9:101848800-101852800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:101848800-101853800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr9:101849800-101853200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr9:101849800-101853800	Weak transcription	Placenta	Placenta
8	chr9:101850400-101853200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:101851800-101858400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:101852200-101853000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr9:101852200-101853400	Enhancers	NHDF-Ad	bronchial
12	chr9:101852200-101855000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:101852400-101853600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:101852400-101855200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:101852400-101856400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr9:101852600-101853400	Enhancers	Osteobl	bone
17	chr9:101852600-101853800	Enhancers	HSMM	muscle
18	chr9:101852600-101855400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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