Variant report

Variant	rs186631
Chromosome Location	chr9:102030330-102030331
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102028907..102031248-chr9:102057200..102058743,2	MCF-7	breast:
2	chr9:101984332..101987104-chr9:102028873..102030994,2	K562	blood:

Variant related genes	Relation type
ENSG00000106803	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1018150	0.90[AMR][1000 genomes]
rs10988701	1.00[ASN][1000 genomes]
rs162614	0.93[AMR][1000 genomes]
rs162615	0.88[AMR][1000 genomes]
rs162619	0.83[AMR][1000 genomes]
rs162625	0.83[AMR][1000 genomes]
rs162626	0.83[AMR][1000 genomes]
rs162627	0.93[AMR][1000 genomes]
rs162631	0.90[AMR][1000 genomes]
rs1648620	0.83[AMR][1000 genomes]
rs1648621	0.83[AMR][1000 genomes]
rs1648622	0.83[AMR][1000 genomes]
rs1648623	0.86[AMR][1000 genomes]
rs1699412	0.95[AMR][1000 genomes]
rs1699416	0.83[AMR][1000 genomes]
rs1699420	0.83[AMR][1000 genomes]
rs1699421	0.83[AMR][1000 genomes]
rs1699422	0.83[AMR][1000 genomes]
rs170462	0.81[AMR][1000 genomes]
rs1746145	0.83[AMR][1000 genomes]
rs1746146	0.83[AMR][1000 genomes]
rs1746147	0.85[AMR][1000 genomes]
rs1746148	0.83[AMR][1000 genomes]
rs1746159	0.86[AMR][1000 genomes]
rs179238	0.93[AMR][1000 genomes]
rs182703	0.81[AMR][1000 genomes]
rs182763	0.83[AMR][1000 genomes]
rs182764	0.81[AMR][1000 genomes]
rs186630	0.83[AMR][1000 genomes]
rs186632	0.83[AMR][1000 genomes]
rs191231	0.81[AMR][1000 genomes]
rs191291	0.95[AMR][1000 genomes]
rs35055733	1.00[ASN][1000 genomes]
rs366150	0.86[AMR][1000 genomes]
rs369222	0.83[AMR][1000 genomes]
rs376504	0.86[AMR][1000 genomes]
rs391888	0.86[AMR][1000 genomes]
rs393321	0.90[AMR][1000 genomes]
rs395420	0.81[AMR][1000 genomes]
rs396479	0.86[AMR][1000 genomes]
rs400935	0.88[AMR][1000 genomes]
rs403886	0.86[AMR][1000 genomes]
rs422263	0.86[AMR][1000 genomes]
rs431892	0.83[AMR][1000 genomes]
rs438361	0.86[AMR][1000 genomes]
rs438521	0.86[AMR][1000 genomes]
rs450698	0.93[AMR][1000 genomes]
rs454339	0.83[AMR][1000 genomes]
rs59092690	1.00[ASN][1000 genomes]
rs701370	0.93[AMR][1000 genomes]
rs7874849	1.00[ASN][1000 genomes]
rs790190	0.93[AMR][1000 genomes]
rs790285	0.81[AMR][1000 genomes]
rs790286	0.81[AMR][1000 genomes]
rs790287	0.81[AMR][1000 genomes]
rs790288	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102022200-102034800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:102022200-102038000	Weak transcription	Aorta	Aorta
3	chr9:102029000-102030800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:102029000-102031000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:102029200-102031000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:102029400-102030600	Weak transcription	HUVEC	blood vessel
7	chr9:102029400-102031000	Weak transcription	Osteobl	bone
8	chr9:102029400-102031400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:102029400-102034600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:102029600-102031000	Weak transcription	NHLF	lung
11	chr9:102029600-102031200	Weak transcription	NH-A	brain
12	chr9:102029600-102031200	Weak transcription	NHDF-Ad	bronchial
13	chr9:102029800-102034800	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links