Variant report

Variant	rs1746147
Chromosome Location	chr9:102061199-102061200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102054861..102056372-chr9:102059573..102062558,2	K562	blood:
2	chr9:102059207..102064374-chr9:102578752..102582809,5	MCF-7	breast:
3	chr9:102060615..102063938-chr9:102065516..102068586,3	K562	blood:

Variant related genes	Relation type
ENSG00000237461	Chromatin interaction
ENSG00000255815	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1018150	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes]
rs162614	0.92[AMR][1000 genomes]
rs162615	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs162619	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs162625	0.88[AMR][1000 genomes]
rs162626	0.88[AMR][1000 genomes]
rs162627	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs162631	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs1648620	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs1648621	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs1648622	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs1648623	0.85[AMR][1000 genomes]
rs1699412	0.90[AMR][1000 genomes]
rs1699416	0.88[AMR][1000 genomes]
rs1699420	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs1699421	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs1699422	1.00[CEU][hapmap];0.97[AMR][1000 genomes]
rs170462	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs1746145	0.88[AMR][1000 genomes]
rs1746146	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs1746148	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs1746159	0.85[AMR][1000 genomes]
rs179238	0.88[AMR][1000 genomes]
rs182703	0.85[AMR][1000 genomes]
rs182763	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs182764	0.84[AMR][1000 genomes]
rs186630	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs186631	0.85[AMR][1000 genomes]
rs186632	0.88[AMR][1000 genomes]
rs191231	0.85[AMR][1000 genomes]
rs191291	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs193019	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs328957	1.00[CEU][hapmap]
rs366150	0.85[AMR][1000 genomes]
rs369222	0.88[AMR][1000 genomes]
rs376504	0.85[AMR][1000 genomes]
rs391888	0.85[AMR][1000 genomes]
rs393321	0.90[AMR][1000 genomes]
rs395420	0.85[AMR][1000 genomes]
rs396479	0.85[AMR][1000 genomes]
rs400935	0.97[AMR][1000 genomes]
rs403886	0.85[AMR][1000 genomes]
rs422263	0.85[AMR][1000 genomes]
rs431892	0.88[AMR][1000 genomes]
rs438361	0.85[AMR][1000 genomes]
rs438521	0.85[AMR][1000 genomes]
rs450698	0.92[AMR][1000 genomes]
rs454339	0.88[AMR][1000 genomes]
rs701370	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs790190	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs790285	0.85[AMR][1000 genomes]
rs790286	0.85[AMR][1000 genomes]
rs790287	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs790288	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102058800-102063600	Weak transcription	K562	blood
2	chr9:102059200-102061200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:102059200-102061400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:102059200-102062400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:102059200-102068600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:102059400-102061200	Weak transcription	NHLF	lung
7	chr9:102059400-102061600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:102059400-102061800	Weak transcription	Fetal Brain Male	brain
9	chr9:102059400-102062800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr9:102060000-102062400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr9:102060200-102061600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:102060200-102061800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr9:102060400-102061400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:102060400-102062200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:102060400-102062400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:102060600-102062200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:102060600-102063000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr9:102060800-102061600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr9:102061000-102062200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:102061000-102062200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:102061000-102062400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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