Variant report

Variant	rs790190
Chromosome Location	chr9:102035552-102035553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101983627..101985150-chr9:102033183..102036041,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106803	Chromatin interaction
ENSG00000119523	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1018150	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs162614	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs162615	0.95[AMR][1000 genomes]
rs162619	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs162625	0.90[AMR][1000 genomes]
rs162626	0.90[AMR][1000 genomes]
rs162627	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162631	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1648620	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1648621	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1648622	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs1648623	0.93[AMR][1000 genomes]
rs1699412	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699416	0.90[AMR][1000 genomes]
rs1699420	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1699421	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1699422	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs170462	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes]
rs1746145	0.90[AMR][1000 genomes]
rs1746146	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs1746147	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs1746148	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1746159	0.93[AMR][1000 genomes]
rs179238	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs182703	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs182763	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs182764	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs186630	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs186631	0.93[AMR][1000 genomes]
rs186632	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs191231	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs191291	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs193019	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs328957	1.00[CEU][hapmap]
rs366150	0.93[AMR][1000 genomes]
rs369222	0.90[AMR][1000 genomes]
rs376504	0.93[AMR][1000 genomes]
rs391888	0.93[AMR][1000 genomes]
rs393321	0.97[AMR][1000 genomes]
rs395420	0.88[AMR][1000 genomes]
rs396479	0.93[AMR][1000 genomes]
rs400935	0.95[AMR][1000 genomes]
rs403886	0.93[AMR][1000 genomes]
rs422263	0.93[AMR][1000 genomes]
rs431892	0.90[AMR][1000 genomes]
rs438361	0.93[AMR][1000 genomes]
rs438521	0.93[AMR][1000 genomes]
rs450698	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs454339	0.90[AMR][1000 genomes]
rs701370	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs790285	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs790286	0.88[AMR][1000 genomes]
rs790287	1.00[CEU][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs790288	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102022200-102038000	Weak transcription	Aorta	Aorta
2	chr9:102031800-102036600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:102034600-102035800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:102034800-102035600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:102034800-102037200	Enhancers	GM12878-XiMat	blood
6	chr9:102035200-102035600	Enhancers	Fetal Kidney	kidney

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