Variant report

Variant	rs1699412
Chromosome Location	chr9:102021319-102021320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102016447..102018282-chr9:102021293..102023502,2	K562	blood:
2	chr9:101983281..101986775-chr9:102018157..102023466,4	MCF-7	breast:
3	chr9:102013065..102016207-chr9:102018717..102022056,3	K562	blood:

Variant related genes	Relation type
ENSG00000119523	Chromatin interaction
ENSG00000106803	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1018150	0.95[AMR][1000 genomes]
rs162614	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs162615	0.92[AMR][1000 genomes]
rs162619	0.88[AMR][1000 genomes]
rs162625	0.88[AMR][1000 genomes]
rs162626	0.88[AMR][1000 genomes]
rs162627	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162631	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1648620	0.88[AMR][1000 genomes]
rs1648621	0.88[AMR][1000 genomes]
rs1648622	0.88[AMR][1000 genomes]
rs1648623	0.90[AMR][1000 genomes]
rs1699416	0.88[AMR][1000 genomes]
rs1699420	0.88[AMR][1000 genomes]
rs1699421	0.88[AMR][1000 genomes]
rs1699422	0.87[AMR][1000 genomes]
rs170462	0.85[AMR][1000 genomes]
rs1746145	0.88[AMR][1000 genomes]
rs1746146	0.88[AMR][1000 genomes]
rs1746147	0.90[AMR][1000 genomes]
rs1746148	0.88[AMR][1000 genomes]
rs1746159	0.90[AMR][1000 genomes]
rs179238	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs182703	0.85[AMR][1000 genomes]
rs182763	0.88[AMR][1000 genomes]
rs182764	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs186630	0.88[AMR][1000 genomes]
rs186631	0.95[AMR][1000 genomes]
rs186632	0.88[AMR][1000 genomes]
rs191231	0.85[AMR][1000 genomes]
rs191291	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs193019	0.81[AMR][1000 genomes]
rs366150	0.90[AMR][1000 genomes]
rs369222	0.88[AMR][1000 genomes]
rs376504	0.90[AMR][1000 genomes]
rs391888	0.90[AMR][1000 genomes]
rs393321	0.95[AMR][1000 genomes]
rs395420	0.85[AMR][1000 genomes]
rs396479	0.90[AMR][1000 genomes]
rs400935	0.92[AMR][1000 genomes]
rs403886	0.90[AMR][1000 genomes]
rs422263	0.90[AMR][1000 genomes]
rs431892	0.88[AMR][1000 genomes]
rs438361	0.90[AMR][1000 genomes]
rs438521	0.90[AMR][1000 genomes]
rs450698	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs454339	0.88[AMR][1000 genomes]
rs701370	0.97[AMR][1000 genomes]
rs790190	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790285	0.85[AMR][1000 genomes]
rs790286	0.85[AMR][1000 genomes]
rs790287	0.85[AMR][1000 genomes]
rs790288	0.88[AMR][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102002400-102021400	Weak transcription	Fetal Brain Female	brain
2	chr9:102002400-102021600	Weak transcription	Gastric	stomach
3	chr9:102002800-102021400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:102006400-102021600	Weak transcription	Aorta	Aorta
5	chr9:102016200-102021400	Weak transcription	HSMM	muscle
6	chr9:102016400-102021600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr9:102016600-102021400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr9:102016600-102021400	Enhancers	Fetal Thymus	thymus
9	chr9:102016600-102021600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:102016600-102021600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr9:102016600-102021600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr9:102016600-102022200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr9:102016800-102021600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr9:102016800-102021800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr9:102016800-102021800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr9:102016800-102022200	Weak transcription	Primary B cells from cord blood	blood
17	chr9:102016800-102022800	Enhancers	Thymus	Thymus
18	chr9:102017000-102021600	Weak transcription	HMEC	breast
19	chr9:102017600-102021400	Enhancers	Fetal Muscle Leg	muscle
20	chr9:102018400-102021400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr9:102018600-102021400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr9:102018600-102021400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:102018800-102021400	Weak transcription	Brain Angular Gyrus	brain
24	chr9:102019000-102021800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr9:102019200-102021400	Weak transcription	Psoas Muscle	Psoas
26	chr9:102019200-102021400	Weak transcription	GM12878-XiMat	blood
27	chr9:102019400-102021400	Enhancers	Fetal Muscle Trunk	muscle
28	chr9:102020200-102021600	Enhancers	Right Ventricle	heart
29	chr9:102020400-102022600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr9:102020600-102021400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
31	chr9:102020600-102021400	Weak transcription	Brain Germinal Matrix	brain
32	chr9:102020600-102021600	Weak transcription	Pancreas	Pancrea
33	chr9:102020600-102022200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:102020800-102021400	Weak transcription	Right Atrium	heart
35	chr9:102020800-102021600	Weak transcription	Left Ventricle	heart
36	chr9:102020800-102021600	Weak transcription	Lung	lung
37	chr9:102020800-102022200	Enhancers	HSMMtube	muscle
38	chr9:102021000-102021400	Enhancers	Brain Anterior Caudate	brain
39	chr9:102021000-102021400	Enhancers	Stomach Smooth Muscle	stomach
40	chr9:102021000-102022200	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr9:102021200-102021400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:102021200-102021400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:102021200-102021400	Enhancers	Muscle Satellite Cultured Cells	--
44	chr9:102021200-102021400	Enhancers	Adipose Nuclei	Adipose
45	chr9:102021200-102021400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr9:102021200-102021400	Enhancers	Fetal Intestine Large	intestine
47	chr9:102021200-102021400	Enhancers	Rectal Smooth Muscle	rectum
48	chr9:102021200-102021600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr9:102021200-102021600	Active TSS	Brain Hippocampus Middle	brain
50	chr9:102021200-102021600	Flanking Active TSS	Brain Substantia Nigra	brain

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