Variant report

Variant	rs186630
Chromosome Location	chr9:102064139-102064140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr9:102063760-102064548	K562	blood:	n/a	n/a
2	STAT1	chr9:102064019-102064906	Hela-S3	cervix:	n/a	chr9:102064584-102064595 chr9:102064563-102064574
3	STAT5A	chr9:102064103-102065011	K562	blood:	n/a	n/a
4	NR2F2	chr9:102064016-102064522	K562	blood:	n/a	n/a
5	JUND	chr9:102064094-102064601	K562	blood:	n/a	n/a
6	STAT1	chr9:102064132-102064721	K562	blood:	n/a	chr9:102064584-102064595 chr9:102064563-102064574
7	RCOR1	chr9:102063630-102065004	K562	blood:	n/a	n/a
8	YY1	chr9:102064014-102064517	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102059207..102064374-chr9:102578752..102582809,5	MCF-7	breast:
2	chr9:102063620..102065608-chr9:102086239..102088529,2	K562	blood:

Variant related genes	Relation type
KRT8P11	TF binding region
ENSG00000237461	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1018150	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162614	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162615	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162619	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162627	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs162631	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1648620	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648621	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648622	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648623	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699412	0.88[AMR][1000 genomes]
rs1699416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699420	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699421	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699422	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs170462	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746146	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746147	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs1746148	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746159	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs179238	0.85[AMR][1000 genomes]
rs182703	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs182763	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs186631	0.83[AMR][1000 genomes]
rs186632	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs191231	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs191291	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs193019	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs328957	1.00[CEU][hapmap]
rs366150	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs369222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs376504	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs391888	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs393321	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs395420	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs396479	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs400935	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs403886	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs422263	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs431892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs438361	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs438521	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs450698	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs454339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs701370	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790190	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs790285	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790286	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs790287	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102059200-102068600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:102061800-102066200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:102061800-102069400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:102062200-102066400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:102062400-102065200	Weak transcription	NHLF	lung
6	chr9:102062400-102066200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:102062400-102070200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:102062600-102065600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:102063200-102064400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr9:102063600-102064200	Enhancers	Placenta	Placenta
11	chr9:102063600-102065200	Enhancers	K562	blood
12	chr9:102063800-102064200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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