Variant report

Variant	rs162614
Chromosome Location	chr9:102038368-102038369
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102037007..102039239-chr9:102065657..102068204,2	K562	blood:

Variant related genes	Relation type
ENSG00000255815	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1018150	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162615	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162619	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162625	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162626	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162627	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs162631	0.93[AMR][1000 genomes]
rs1648620	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648621	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648622	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648623	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699412	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs1699416	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699420	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699421	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699422	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs170462	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746145	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746146	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746147	0.92[AMR][1000 genomes]
rs1746148	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746159	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs179238	0.95[AMR][1000 genomes]
rs182703	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs182763	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs182764	0.82[AMR][1000 genomes]
rs186630	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs186631	0.93[AMR][1000 genomes]
rs186632	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs191231	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs191291	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs193019	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs366150	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs369222	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs376504	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs391888	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs393321	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs395420	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs396479	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs400935	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs403886	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs422263	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs431892	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs438361	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs438521	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs450698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs454339	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs701370	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790190	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs790285	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790286	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs790287	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790288	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv520193	chr9:102037970-102039043	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102036800-102039800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links