Variant report

Variant	rs179238
Chromosome Location	chr9:102024447-102024448
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1018150	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs162614	0.95[AMR][1000 genomes]
rs162615	0.90[AMR][1000 genomes]
rs162619	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs162625	0.85[AMR][1000 genomes]
rs162626	0.85[AMR][1000 genomes]
rs162627	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162631	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1648620	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs1648621	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs1648622	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs1648623	0.88[AMR][1000 genomes]
rs1699412	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699416	0.85[AMR][1000 genomes]
rs1699420	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs1699421	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs1699422	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs170462	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1746145	0.85[AMR][1000 genomes]
rs1746146	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs1746147	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs1746148	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs1746159	0.88[AMR][1000 genomes]
rs182703	0.83[AMR][1000 genomes]
rs182763	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs182764	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs186630	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs186631	0.93[AMR][1000 genomes]
rs186632	0.85[AMR][1000 genomes]
rs191231	0.83[AMR][1000 genomes]
rs191291	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs193019	1.00[CEU][hapmap]
rs328957	1.00[CEU][hapmap]
rs366150	0.88[AMR][1000 genomes]
rs369222	0.85[AMR][1000 genomes]
rs376504	0.88[AMR][1000 genomes]
rs391888	0.88[AMR][1000 genomes]
rs393321	0.92[AMR][1000 genomes]
rs395420	0.83[AMR][1000 genomes]
rs396479	0.88[AMR][1000 genomes]
rs400935	0.90[AMR][1000 genomes]
rs403886	0.88[AMR][1000 genomes]
rs422263	0.88[AMR][1000 genomes]
rs431892	0.85[AMR][1000 genomes]
rs438361	0.88[AMR][1000 genomes]
rs438521	0.88[AMR][1000 genomes]
rs450698	0.95[AMR][1000 genomes]
rs454339	0.85[AMR][1000 genomes]
rs701370	1.00[CEU][hapmap];0.95[AMR][1000 genomes]
rs790190	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790285	0.83[AMR][1000 genomes]
rs790286	0.83[AMR][1000 genomes]
rs790287	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs790288	0.85[AMR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102022200-102028200	Weak transcription	Spleen	Spleen
2	chr9:102022200-102028800	Weak transcription	Psoas Muscle	Psoas
3	chr9:102022200-102028800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:102022200-102034800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:102022200-102038000	Weak transcription	Aorta	Aorta
6	chr9:102022400-102025200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr9:102022400-102028600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr9:102022400-102028800	Weak transcription	Adipose Nuclei	Adipose
9	chr9:102022600-102028800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr9:102022800-102028400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:102022800-102028600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:102022800-102028600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:102022800-102028800	Weak transcription	Primary T cells from cord blood	blood
14	chr9:102022800-102028800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:102023000-102028400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr9:102023600-102027600	Weak transcription	Fetal Heart	heart
17	chr9:102023600-102028600	Weak transcription	Brain Anterior Caudate	brain
18	chr9:102024200-102024600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr9:102024200-102025200	Enhancers	GM12878-XiMat	blood
20	chr9:102024400-102028200	Weak transcription	Fetal Thymus	thymus

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