Variant report

Variant	rs162625
Chromosome Location	chr9:102057443-102057444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102056457..102058795-chr9:102061906..102063749,2	K562	blood:
2	chr9:102047027..102049139-chr9:102055624..102058057,2	MCF-7	breast:
3	chr9:101984200..101986719-chr9:102057208..102060495,3	K562	blood:
4	chr9:102028907..102031248-chr9:102057200..102058743,2	MCF-7	breast:
5	chr9:101995734..101997382-chr9:102056760..102059465,2	K562	blood:

Variant related genes	Relation type
ENSG00000106803	Chromatin interaction
ENSG00000119523	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1018150	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162614	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162615	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162626	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162627	0.90[AMR][1000 genomes]
rs162631	0.83[AMR][1000 genomes]
rs1648620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648622	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648623	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699412	0.88[AMR][1000 genomes]
rs1699416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699422	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs170462	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746147	0.88[AMR][1000 genomes]
rs1746148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746159	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs179238	0.85[AMR][1000 genomes]
rs182703	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs182763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs186630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs186631	0.83[AMR][1000 genomes]
rs186632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs191231	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs191291	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs193019	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs366150	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs369222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs376504	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs391888	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs393321	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs395420	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs396479	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs400935	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs403886	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs422263	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs423592	0.86[AFR][1000 genomes]
rs431892	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs438361	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs438521	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs450698	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs454339	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs701370	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790190	0.90[AMR][1000 genomes]
rs790285	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790286	0.98[AMR][1000 genomes]
rs790287	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790288	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102054400-102058400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:102057400-102057600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:102057400-102057600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr9:102057400-102058600	Enhancers	Primary B cells from peripheral blood	blood
5	chr9:102057400-102058800	Enhancers	K562	blood

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