Variant report

Variant	rs1648621
Chromosome Location	chr9:102062523-102062524
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr9:102061282-102062531	SK-N-SH	brain:	n/a	chr9:102062207-102062214 chr9:102061712-102061723 chr9:102062204-102062215 chr9:102062206-102062214 chr9:102062206-102062214
2	CTCF	chr9:102061366-102062559	SK-N-SH	brain:	n/a	chr9:102062014-102062032
3	RAD21	chr9:102061268-102062607	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:102054861..102056372-chr9:102059573..102062558,2	K562	blood:
2	chr9:102056457..102058795-chr9:102061906..102063749,2	K562	blood:
3	chr9:102059207..102064374-chr9:102578752..102582809,5	MCF-7	breast:
4	chr9:102060615..102063938-chr9:102065516..102068586,3	K562	blood:
5	chr9:102053304..102054905-chr9:102062112..102063899,2	MCF-7	breast:

Variant related genes	Relation type
KRT8P11	TF binding region
ENSG00000255815	Chromatin interaction
ENSG00000237461	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1018150	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162614	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162615	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162619	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162627	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs162631	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1648620	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648622	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648623	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699412	0.88[AMR][1000 genomes]
rs1699416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699420	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699421	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699422	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs170462	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746146	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746147	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs1746148	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746159	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs179238	0.85[AMR][1000 genomes]
rs182703	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs182763	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs186630	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs186631	0.83[AMR][1000 genomes]
rs186632	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs191231	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs191291	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs193019	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs328957	1.00[CEU][hapmap]
rs366150	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs369222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs376504	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs391888	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs393321	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs395420	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs396479	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs400935	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs403886	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs422263	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs431892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs438361	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs438521	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs450698	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs454339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs701370	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790190	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs790285	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790286	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs790287	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102058800-102063600	Weak transcription	K562	blood
2	chr9:102059200-102068600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:102059400-102062800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:102060600-102063000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:102061600-102063600	Weak transcription	Placenta	Placenta
6	chr9:102061600-102063800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:102061800-102062800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:102061800-102066200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:102061800-102069400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:102062000-102063200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:102062200-102066400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:102062400-102063200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:102062400-102065200	Weak transcription	NHLF	lung
14	chr9:102062400-102066200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr9:102062400-102070200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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