Variant report

Variant	rs790286
Chromosome Location	chr9:102070186-102070187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1018150	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs162614	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs162615	0.83[AMR][1000 genomes]
rs162619	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs162625	0.98[AMR][1000 genomes]
rs162626	0.98[AMR][1000 genomes]
rs162627	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes]
rs162631	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs1648620	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs1648621	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs1648622	1.00[CEU][hapmap];0.98[AMR][1000 genomes]
rs1648623	0.95[AMR][1000 genomes]
rs1699412	0.85[AMR][1000 genomes]
rs1699416	0.98[AMR][1000 genomes]
rs1699420	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs1699421	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs1699422	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs170462	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1746145	0.98[AMR][1000 genomes]
rs1746146	1.00[CEU][hapmap];0.98[AMR][1000 genomes]
rs1746147	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs1746148	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs1746159	0.95[AMR][1000 genomes]
rs179238	0.83[AMR][1000 genomes]
rs182703	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs182763	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs186630	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs186631	0.81[AMR][1000 genomes]
rs186632	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs191231	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs191291	1.00[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs193019	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs328957	1.00[CEU][hapmap]
rs366150	0.95[AMR][1000 genomes]
rs369222	0.98[AMR][1000 genomes]
rs376504	0.95[AMR][1000 genomes]
rs391888	0.95[AMR][1000 genomes]
rs393321	0.85[AMR][1000 genomes]
rs395420	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs396479	0.95[AMR][1000 genomes]
rs400935	0.88[AMR][1000 genomes]
rs403886	0.95[AMR][1000 genomes]
rs422263	0.95[AMR][1000 genomes]
rs431892	0.98[AMR][1000 genomes]
rs438361	0.95[AMR][1000 genomes]
rs438521	0.95[AMR][1000 genomes]
rs450698	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs454339	0.98[AMR][1000 genomes]
rs701370	1.00[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs790190	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes]
rs790285	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs790287	1.00[CEU][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs790288	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv972435	chr9:102067448-102071368	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102062400-102070200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:102068000-102070200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:102069400-102070400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr9:102069600-102070800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:102069800-102070200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:102069800-102070200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:102069800-102070400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr9:102069800-102070400	Enhancers	Placenta	Placenta
9	chr9:102069800-102070600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:102069800-102070600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:102069800-102070800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:102070000-102070200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:102070000-102070600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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