Variant report

Variant	rs162631
Chromosome Location	chr9:102019540-102019541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102013065..102014831-chr9:102017770..102020217,2	K562	blood:
2	chr9:101990790..101993783-chr9:102017197..102019888,3	K562	blood:
3	chr9:101983281..101986775-chr9:102018157..102023466,4	MCF-7	breast:
4	chr9:102013065..102016207-chr9:102018717..102022056,3	K562	blood:

Variant related genes	Relation type
ENSG00000119523	Chromatin interaction
ENSG00000106803	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1018150	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs162614	0.93[AMR][1000 genomes]
rs162615	0.88[AMR][1000 genomes]
rs162619	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs162625	0.83[AMR][1000 genomes]
rs162626	0.83[AMR][1000 genomes]
rs162627	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1648620	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1648621	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1648622	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1648623	0.86[AMR][1000 genomes]
rs1699412	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1699416	0.83[AMR][1000 genomes]
rs1699420	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1699421	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1699422	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs170462	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs1746145	0.83[AMR][1000 genomes]
rs1746146	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1746147	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs1746148	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1746159	0.86[AMR][1000 genomes]
rs179238	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs182703	0.81[AMR][1000 genomes]
rs182763	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs182764	0.81[AMR][1000 genomes]
rs186630	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs186631	0.90[AMR][1000 genomes]
rs186632	0.83[AMR][1000 genomes]
rs191231	0.81[AMR][1000 genomes]
rs191291	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs193019	1.00[CEU][hapmap]
rs328957	1.00[CEU][hapmap]
rs366150	0.86[AMR][1000 genomes]
rs369222	0.83[AMR][1000 genomes]
rs376504	0.86[AMR][1000 genomes]
rs391888	0.86[AMR][1000 genomes]
rs393321	0.90[AMR][1000 genomes]
rs395420	0.81[AMR][1000 genomes]
rs396479	0.86[AMR][1000 genomes]
rs400935	0.88[AMR][1000 genomes]
rs403886	0.86[AMR][1000 genomes]
rs422263	0.86[AMR][1000 genomes]
rs431892	0.83[AMR][1000 genomes]
rs438361	0.86[AMR][1000 genomes]
rs438521	0.86[AMR][1000 genomes]
rs450698	0.93[AMR][1000 genomes]
rs454339	0.83[AMR][1000 genomes]
rs701370	1.00[CEU][hapmap];0.93[AMR][1000 genomes]
rs790190	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs790285	0.81[AMR][1000 genomes]
rs790286	0.81[AMR][1000 genomes]
rs790287	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs790288	0.83[AMR][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102002400-102021400	Weak transcription	Fetal Brain Female	brain
2	chr9:102002400-102021600	Weak transcription	Gastric	stomach
3	chr9:102002800-102021400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:102004200-102020000	Weak transcription	Pancreas	Pancrea
5	chr9:102006400-102021600	Weak transcription	Aorta	Aorta
6	chr9:102016200-102021400	Weak transcription	HSMM	muscle
7	chr9:102016400-102021600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr9:102016600-102021400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr9:102016600-102021400	Enhancers	Fetal Thymus	thymus
10	chr9:102016600-102021600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:102016600-102021600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:102016600-102021600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr9:102016600-102022200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:102016800-102021200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:102016800-102021600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr9:102016800-102021800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr9:102016800-102021800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr9:102016800-102022200	Weak transcription	Primary B cells from cord blood	blood
19	chr9:102016800-102022800	Enhancers	Thymus	Thymus
20	chr9:102017000-102021600	Weak transcription	HMEC	breast
21	chr9:102017200-102021000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr9:102017600-102020800	Enhancers	Fetal Heart	heart
23	chr9:102017600-102021400	Enhancers	Fetal Muscle Leg	muscle
24	chr9:102018400-102021400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr9:102018600-102020000	Weak transcription	Right Atrium	heart
26	chr9:102018600-102021000	Weak transcription	Brain Anterior Caudate	brain
27	chr9:102018600-102021400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:102018600-102021400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:102018800-102020600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr9:102018800-102021400	Weak transcription	Brain Angular Gyrus	brain
31	chr9:102019000-102020200	Weak transcription	Left Ventricle	heart
32	chr9:102019000-102020200	Weak transcription	Right Ventricle	heart
33	chr9:102019000-102020600	Weak transcription	Brain Substantia Nigra	brain
34	chr9:102019000-102021800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr9:102019200-102019600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr9:102019200-102021000	Weak transcription	Brain Hippocampus Middle	brain
37	chr9:102019200-102021400	Weak transcription	Psoas Muscle	Psoas
38	chr9:102019200-102021400	Weak transcription	GM12878-XiMat	blood
39	chr9:102019400-102021400	Enhancers	Fetal Muscle Trunk	muscle

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