Variant report

Variant	rs1648623
Chromosome Location	chr9:102051476-102051477
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102047135..102049009-chr9:102049620..102052159,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1018150	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162614	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162615	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162619	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162625	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162626	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162627	0.93[AMR][1000 genomes]
rs162631	0.86[AMR][1000 genomes]
rs1648620	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648621	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648622	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699412	0.90[AMR][1000 genomes]
rs1699416	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699420	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699421	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1699422	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs170462	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746145	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746146	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746147	0.85[AMR][1000 genomes]
rs1746148	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1746159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs179238	0.88[AMR][1000 genomes]
rs182703	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs182763	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs186630	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs186631	0.86[AMR][1000 genomes]
rs186632	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs191231	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs191291	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs193019	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs366150	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs369222	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs376504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs391888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs393321	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs395420	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs396479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs400935	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs403886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs422263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs423592	0.87[AFR][1000 genomes]
rs431892	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs438361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs438521	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs450698	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs454339	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs701370	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790190	0.93[AMR][1000 genomes]
rs790285	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790286	0.95[AMR][1000 genomes]
rs790287	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790288	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv526378	chr9:102045144-102056057	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102050800-102052000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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