Variant report

Variant	rs423592
Chromosome Location	chr9:102051236-102051237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs162625	0.86[AFR][1000 genomes]
rs162626	0.84[AFR][1000 genomes]
rs1648622	0.81[AFR][1000 genomes]
rs1648623	0.87[AFR][1000 genomes]
rs1699416	0.86[AFR][1000 genomes]
rs1746145	0.86[AFR][1000 genomes]
rs1746146	0.86[AFR][1000 genomes]
rs1746159	0.87[AFR][1000 genomes]
rs366150	0.86[AFR][1000 genomes]
rs369222	0.86[AFR][1000 genomes]
rs376504	0.87[AFR][1000 genomes]
rs391888	0.87[AFR][1000 genomes]
rs396479	0.87[AFR][1000 genomes]
rs403886	0.87[AFR][1000 genomes]
rs422263	0.87[AFR][1000 genomes]
rs431892	0.85[AFR][1000 genomes]
rs438361	0.87[AFR][1000 genomes]
rs438521	0.88[AFR][1000 genomes]
rs454339	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv526378	chr9:102045144-102056057	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102050800-102052000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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