Variant report

Variant	rs1544210
Chromosome Location	chr10:94487801-94487802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1112718	0.83[ASN][1000 genomes]
rs2488075	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2497304	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2497305	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2497306	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61862778	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61862780	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94481200-94488200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr10:94486000-94488800	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94486800-94488000	Enhancers	K562	blood
4	chr10:94487200-94488000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:94487200-94488000	Enhancers	Hela-S3	cervix
6	chr10:94487200-94488400	Enhancers	HepG2	liver
7	chr10:94487400-94491000	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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