Variant report

Variant	rs1544583
Chromosome Location	chr7:117818922-117818923
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117808352..117810349-chr7:117817337..117819937,2	K562	blood:
2	chr7:117816414..117818664-chr7:117818889..117820508,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10247768	0.93[CEU][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]
rs10487392	0.88[EUR][1000 genomes]
rs11487110	0.85[CEU][hapmap]
rs11542074	0.94[EUR][1000 genomes]
rs11974039	0.92[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes]
rs11983651	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs12112697	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs12154684	0.89[JPT][hapmap];0.92[EUR][1000 genomes]
rs1544584	0.94[EUR][1000 genomes]
rs17140984	0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]
rs17141053	0.92[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs2041527	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2215628	0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]
rs2286863	0.94[EUR][1000 genomes]
rs2286865	0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap]
rs28260	0.88[EUR][1000 genomes]
rs33924981	0.94[EUR][1000 genomes]
rs34010516	0.87[EUR][1000 genomes]
rs34019303	0.94[EUR][1000 genomes]
rs35218902	0.92[EUR][1000 genomes]
rs35485182	0.92[EUR][1000 genomes]
rs41903	0.87[EUR][1000 genomes]
rs41904	0.86[EUR][1000 genomes]
rs41912	0.82[EUR][1000 genomes]
rs41921	0.82[EUR][1000 genomes]
rs41923	0.83[EUR][1000 genomes]
rs41924	0.83[EUR][1000 genomes]
rs41925	0.88[EUR][1000 genomes]
rs41930	0.81[EUR][1000 genomes]
rs41931	0.84[EUR][1000 genomes]
rs41936	0.82[EUR][1000 genomes]
rs45604739	0.94[EUR][1000 genomes]
rs4730837	0.92[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes]
rs62466471	0.92[EUR][1000 genomes]
rs62466515	0.94[EUR][1000 genomes]
rs62468297	0.92[EUR][1000 genomes]
rs62469806	0.84[EUR][1000 genomes]
rs6964911	0.81[CEU][hapmap]
rs7786233	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs7801976	0.83[EUR][1000 genomes]
rs9641593	0.94[EUR][1000 genomes]
rs9886333	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1544583	LSM8	cis	multi-tissue	Pritchard

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117816000-117822600	Weak transcription	NHEK	skin
2	chr7:117816200-117822800	Weak transcription	Fetal Heart	heart
3	chr7:117816400-117822800	Weak transcription	Primary B cells from cord blood	blood
4	chr7:117818200-117819200	Enhancers	K562	blood
5	chr7:117818400-117822400	Weak transcription	Pancreas	Pancrea
6	chr7:117818800-117822400	Weak transcription	Liver	Liver
7	chr7:117818800-117822800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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