Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10226152	0.82[EUR][1000 genomes]
rs10227326	0.82[EUR][1000 genomes]
rs10229589	0.82[EUR][1000 genomes]
rs10272234	0.83[ASN][1000 genomes]
rs10487390	0.82[EUR][1000 genomes]
rs1054032	0.82[EUR][1000 genomes]
rs1061731	0.82[EUR][1000 genomes]
rs1117254	0.82[EUR][1000 genomes]
rs11486992	0.82[EUR][1000 genomes]
rs11543742	0.81[EUR][1000 genomes]
rs11979012	0.84[EUR][1000 genomes]
rs12112697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224733	0.80[EUR][1000 genomes]
rs1544583	0.80[EUR][1000 genomes]
rs2041528	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2058416	0.83[EUR][1000 genomes]
rs2058417	0.80[EUR][1000 genomes]
rs2191920	0.83[EUR][1000 genomes]
rs2402322	0.82[EUR][1000 genomes]
rs2896242	0.82[EUR][1000 genomes]
rs3802012	0.84[EUR][1000 genomes]
rs4141028	0.84[EUR][1000 genomes]
rs41908	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4535672	0.92[EUR][1000 genomes]
rs5002233	0.82[EUR][1000 genomes]
rs6944524	0.82[EUR][1000 genomes]
rs6946855	0.80[EUR][1000 genomes]
rs6948096	0.82[EUR][1000 genomes]
rs6964911	0.80[EUR][1000 genomes]
rs6965144	0.82[EUR][1000 genomes]
rs7796145	0.82[EUR][1000 genomes]
rs7796148	0.82[EUR][1000 genomes]
rs7797855	0.82[EUR][1000 genomes]
rs9655829	0.82[EUR][1000 genomes]
rs979652	0.82[EUR][1000 genomes]
rs989899	0.83[EUR][1000 genomes]
rs992035	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9886333	LSM8	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117791200-117815800	Weak transcription	Psoas Muscle	Psoas

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