Variant report

Variant	rs1545366
Chromosome Location	chr1:159568372-159568373
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1156060	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077889	0.97[AFR][1000 genomes]
rs12129811	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12409540	1.00[CHB][hapmap]
rs12755355	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1341664	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1446963	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446964	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446969	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1562383	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562385	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17422585	1.00[CHB][hapmap]
rs2592882	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2592883	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2592884	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2808638	0.97[AFR][1000 genomes]
rs2808646	0.98[AFR][1000 genomes]
rs2808655	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2808666	0.98[AFR][1000 genomes]
rs28383573	0.87[EUR][1000 genomes]
rs35046328	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7511872	1.00[CHB][hapmap]
rs7523568	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9427022	0.95[AFR][1000 genomes]
rs981677	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159563800-159573400	Weak transcription	Liver	Liver
2	chr1:159564000-159569400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:159565400-159569200	Enhancers	HUVEC	blood vessel
4	chr1:159566400-159569000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:159566600-159568600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:159566800-159568800	Enhancers	NHEK	skin
7	chr1:159566800-159569200	Enhancers	HMEC	breast
8	chr1:159567000-159568600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:159567000-159568800	Enhancers	Osteobl	bone
10	chr1:159567200-159569000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:159567400-159568600	Enhancers	Placenta Amnion	Placenta Amnion
12	chr1:159567400-159568600	Enhancers	Hela-S3	cervix
13	chr1:159567400-159568800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:159567400-159569000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:159567400-159569000	Enhancers	Placenta	Placenta
16	chr1:159567600-159568400	Enhancers	H9 Cell Line	embryonic stem cell
17	chr1:159567600-159568400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:159567600-159568400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:159567600-159568600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr1:159567600-159569000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:159567600-159569000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:159567800-159568400	Enhancers	A549	lung
23	chr1:159568000-159569000	Enhancers	HSMMtube	muscle
24	chr1:159568000-159569000	Enhancers	NH-A	brain
25	chr1:159568000-159569600	Enhancers	HSMM	muscle
26	chr1:159568200-159569000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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