Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11633358	0.92[ASN][1000 genomes]
rs11636285	0.81[EUR][1000 genomes]
rs11639451	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439203	0.82[ASN][1000 genomes]
rs1481834	0.88[ASN][1000 genomes]
rs1481842	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1545873	0.97[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1545875	0.84[ASN][1000 genomes]
rs16942196	0.84[AFR][1000 genomes]
rs338415	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs338416	0.82[ASN][1000 genomes]
rs4774356	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4775239	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4775240	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6494168	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7176165	0.89[ASN][1000 genomes]
rs7177039	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8042339	0.83[ASN][1000 genomes]
rs8042376	0.83[ASN][1000 genomes]
rs8042476	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60447800-60453200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:60448000-60453200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr15:60448000-60453200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:60448000-60453400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:60448000-60453400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:60448200-60453000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:60448200-60453200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:60449400-60455400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:60451800-60453200	Enhancers	Placenta	Placenta
10	chr15:60452000-60453200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:60452000-60455400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr15:60452400-60453000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:60452400-60454600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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