Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11633358	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11639451	0.88[ASN][1000 genomes]
rs12439203	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1481834	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1481842	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1545872	0.97[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1545875	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1552129	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16942196	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs338415	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs338416	0.92[ASN][1000 genomes]
rs4774356	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4775239	0.88[ASN][1000 genomes]
rs4775240	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6494168	0.87[ASN][1000 genomes]
rs7176165	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7176227	0.84[ASN][1000 genomes]
rs7177039	0.85[ASN][1000 genomes]
rs8036508	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8040351	0.90[ASN][1000 genomes]
rs8042339	0.93[ASN][1000 genomes]
rs8042376	0.94[ASN][1000 genomes]
rs8042476	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1545873	DYX1C1	cis	cerebellum	SCAN
rs1545873	TCF12	cis	cerebellum	SCAN
rs1545873	GCOM1	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60449400-60455400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:60452000-60455400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr15:60452400-60454600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:60453200-60454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:60453200-60454800	Weak transcription	Placenta	Placenta
6	chr15:60453600-60455000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:60453800-60454800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:60453800-60455000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:60453800-60455000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:60453800-60455200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:60454000-60455000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:60454400-60455400	Enhancers	Brain Substantia Nigra	brain
13	chr15:60454400-60455600	Enhancers	Brain Germinal Matrix	brain
14	chr15:60454400-60464800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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