Variant report
| Variant | rs8040351 |
|---|---|
| Chromosome Location | chr15:60465213-60465214 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11633358 | 0.86[EUR][1000 genomes] |
| rs12439203 | 0.85[ASN][1000 genomes] |
| rs1481834 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1481842 | 0.91[ASN][1000 genomes] |
| rs1545873 | 0.90[ASN][1000 genomes] |
| rs1545875 | 0.85[ASN][1000 genomes] |
| rs1552129 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs16942196 | 0.87[ASN][1000 genomes] |
| rs338415 | 0.93[ASN][1000 genomes] |
| rs338416 | 0.95[ASN][1000 genomes] |
| rs4774356 | 0.89[ASN][1000 genomes] |
| rs4775240 | 0.90[ASN][1000 genomes] |
| rs7176165 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs8036508 | 0.90[ASN][1000 genomes] |
| rs8042339 | 0.93[ASN][1000 genomes] |
| rs8042376 | 0.94[ASN][1000 genomes] |
| rs8042476 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv904280 | chr15:60042722-60524025 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1036168 | chr15:60465000-60530343 | Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs8040351 | TRIM22 | trans | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:60464200-60467000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
