Variant report

Variant	rs1552129
Chromosome Location	chr15:60460786-60460787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11633358	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12439203	0.93[ASN][1000 genomes]
rs1481834	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1481842	0.89[ASN][1000 genomes]
rs1545873	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1545875	0.93[ASN][1000 genomes]
rs16942196	0.96[ASN][1000 genomes]
rs338415	0.94[ASN][1000 genomes]
rs338416	0.93[ASN][1000 genomes]
rs4774356	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4775240	0.89[ASN][1000 genomes]
rs7176165	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7176227	0.85[ASN][1000 genomes]
rs7177039	0.84[ASN][1000 genomes]
rs8036508	0.98[ASN][1000 genomes]
rs8040351	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8042339	0.94[ASN][1000 genomes]
rs8042376	0.93[ASN][1000 genomes]
rs8042476	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60454400-60464800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:60459200-60463600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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