Variant report

Variant	rs1546156
Chromosome Location	chr4:81951610-81951611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:81951602-81952945	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
BMP3	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10031561	0.81[AFR][1000 genomes]
rs1106107	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13138132	0.84[AFR][1000 genomes]
rs1353387	0.82[AFR][1000 genomes]
rs1390319	0.84[AFR][1000 genomes]
rs2055178	0.82[AFR][1000 genomes]
rs2868126	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3412549	chr4:81834479-81951850	Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81951000-81951800	Enhancers	Pancreas	Pancrea
2	chr4:81951000-81952200	Bivalent/Poised TSS	Colonic Mucosa	Colon
3	chr4:81951000-81952200	Active TSS	Colon Smooth Muscle	Colon
4	chr4:81951000-81953000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr4:81951000-81953400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr4:81951000-81953400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
7	chr4:81951000-81954800	Active TSS	Duodenum Mucosa	Duodenum
8	chr4:81951200-81951800	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
9	chr4:81951200-81951800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
10	chr4:81951200-81951800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
11	chr4:81951200-81951800	Active TSS	Lung	lung
12	chr4:81951200-81951800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
13	chr4:81951200-81952200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:81951200-81952200	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
15	chr4:81951200-81952400	Bivalent/Poised TSS	Fetal Stomach	stomach
16	chr4:81951200-81952600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
17	chr4:81951200-81952600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:81951200-81952600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:81951200-81952600	Bivalent/Poised TSS	Fetal Brain Female	brain
20	chr4:81951200-81952800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:81951200-81953000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:81951200-81953000	Bivalent Enhancer	Liver	Liver
23	chr4:81951200-81953200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
24	chr4:81951200-81953200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:81951200-81953400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
26	chr4:81951200-81953400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:81951200-81953400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
28	chr4:81951200-81953600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
29	chr4:81951200-81953600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
30	chr4:81951200-81953600	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr4:81951200-81953600	Bivalent/Poised TSS	Fetal Kidney	kidney
32	chr4:81951200-81954200	Active TSS	Ovary	ovary
33	chr4:81951200-81955400	Active TSS	Rectal Smooth Muscle	rectum
34	chr4:81951400-81951800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:81951400-81951800	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
36	chr4:81951400-81951800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
37	chr4:81951400-81951800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr4:81951400-81951800	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
39	chr4:81951400-81951800	Bivalent Enhancer	Fetal Thymus	thymus
40	chr4:81951400-81951800	Bivalent Enhancer	Psoas Muscle	Psoas
41	chr4:81951400-81952000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr4:81951400-81952000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:81951400-81952000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
44	chr4:81951400-81952000	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
45	chr4:81951400-81952000	Active TSS	Stomach Smooth Muscle	stomach
46	chr4:81951400-81952200	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr4:81951400-81952200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:81951400-81952200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
49	chr4:81951400-81952200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:81951400-81952200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links