Variant report
| Variant | rs1546351 |
|---|---|
| Chromosome Location | chr2:98975117-98975118 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10166248 | 0.89[EUR][1000 genomes] |
| rs1111581 | 1.00[CHB][hapmap] |
| rs1111583 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12463618 | 1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs12464558 | 0.84[ASN][1000 genomes] |
| rs12467200 | 1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs13400705 | 0.90[EUR][1000 genomes] |
| rs1546352 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs17429208 | 0.88[YRI][hapmap] |
| rs34118499 | 0.84[ASN][1000 genomes] |
| rs3769755 | 0.94[CHB][hapmap] |
| rs4850873 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs4851126 | 1.00[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs4851127 | 1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs4851128 | 1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs55756581 | 0.90[EUR][1000 genomes] |
| rs55851325 | 0.83[ASN][1000 genomes] |
| rs59952489 | 0.84[ASN][1000 genomes] |
| rs60400559 | 0.84[ASN][1000 genomes] |
| rs62156295 | 0.84[ASN][1000 genomes] |
| rs867588 | 1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs937727 | 1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs937728 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs937729 | 1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv518056 | chr2:98586842-99156296 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1008645 | chr2:98915767-99010743 | Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1010466 | chr2:98938886-98998109 | Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1013617 | chr2:98943377-99004173 | Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:98975000-98975600 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
