Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98947397..98949375-chr2:98973131..98975837,2	MCF-7	breast:
2	chr2:98973452..98976374-chr7:75594519..75596340,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1111581	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1111583	1.00[CHB][hapmap]
rs12463618	1.00[CHB][hapmap];0.83[JPT][hapmap];0.99[ASN][1000 genomes]
rs12464558	0.99[ASN][1000 genomes]
rs12467200	1.00[CHB][hapmap];0.83[JPT][hapmap];0.99[ASN][1000 genomes]
rs1546351	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1546352	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34118499	0.99[ASN][1000 genomes]
rs3769755	0.94[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4850873	1.00[CHB][hapmap];0.83[JPT][hapmap];0.98[ASN][1000 genomes]
rs4851126	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs4851127	1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs4851128	1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs55851325	1.00[ASN][1000 genomes]
rs59952489	0.99[ASN][1000 genomes]
rs60400559	0.99[ASN][1000 genomes]
rs62156295	0.99[ASN][1000 genomes]
rs867588	1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes]
rs937727	1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes]
rs937729	1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1008645	chr2:98915767-99010743	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1010466	chr2:98938886-98998109	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013617	chr2:98943377-99004173	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98972600-98974200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:98973400-98974200	Enhancers	A549	lung
3	chr2:98973600-98974200	Enhancers	Gastric	stomach
4	chr2:98973800-98974200	Enhancers	Lung	lung
5	chr2:98974000-98975000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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