Variant report

Variant	rs1546683
Chromosome Location	chr3:118199675-118199676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11715251	0.90[ASN][1000 genomes]
rs12638367	0.89[ASN][1000 genomes]
rs13323664	0.90[ASN][1000 genomes]
rs13327271	0.90[ASN][1000 genomes]
rs1401959	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1401960	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1464309	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1520124	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1520125	0.88[ASN][1000 genomes]
rs1520126	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1520127	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1520131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1983380	0.90[ASN][1000 genomes]
rs2102925	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28649582	0.88[ASN][1000 genomes]
rs2946812	0.90[ASN][1000 genomes]
rs2946818	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2970124	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687918	0.89[ASN][1000 genomes]
rs4687919	0.89[ASN][1000 genomes]
rs58128735	0.88[ASN][1000 genomes]
rs7618451	0.87[ASN][1000 genomes]
rs9828098	0.85[ASN][1000 genomes]
rs9832543	0.90[ASN][1000 genomes]
rs9877285	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460829	chr3:118195601-118229370	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591349	chr3:118195601-118229370	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118197200-118200800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:118197200-118201200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:118197200-118201200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:118197600-118199800	Enhancers	GM12878-XiMat	blood
5	chr3:118198800-118200800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:118199000-118200000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:118199000-118202200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:118199200-118201200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:118199400-118199800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr3:118199600-118202000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:118199600-118202000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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