Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C3orf30-2	chr3:118207654-118207881	XLOC_002775
2	lnc-C3orf30-2	chr3:118207654-118207872	XLOC_002775
3	lnc-C3orf30-2	chr3:118207645-118207872	XLOC_002775
4	lnc-C3orf30-2	chr3:118207645-118207872	XLOC_002775
5	lnc-C3orf30-2	chr3:118207720-118207872	NONHSAT091366

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11715251	0.88[ASN][1000 genomes]
rs12638367	0.87[ASN][1000 genomes]
rs13323664	0.88[ASN][1000 genomes]
rs13327271	0.88[ASN][1000 genomes]
rs1401959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1401960	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1464309	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1520124	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1520125	0.91[ASN][1000 genomes]
rs1520126	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1520131	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546683	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1983380	0.89[ASN][1000 genomes]
rs2102925	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28649582	0.91[ASN][1000 genomes]
rs2946812	0.88[ASN][1000 genomes]
rs2946818	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970124	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687918	0.91[ASN][1000 genomes]
rs4687919	0.91[ASN][1000 genomes]
rs58128735	0.90[ASN][1000 genomes]
rs7618451	0.85[ASN][1000 genomes]
rs9828098	0.83[ASN][1000 genomes]
rs9832543	0.89[ASN][1000 genomes]
rs9877285	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460829	chr3:118195601-118229370	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591349	chr3:118195601-118229370	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv829690	chr3:118205361-118378010	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118206400-118208400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:118207000-118208200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:118207200-118208200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:118207200-118209400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:118207400-118208200	Enhancers	HMEC	breast
6	chr3:118207400-118208400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:118207600-118208000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:118207600-118208200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:118207600-118208400	Enhancers	HUES64 Cell Line	embryonic stem cell

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