Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11751413	0.91[EUR][1000 genomes]
rs11755205	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756168	0.90[EUR][1000 genomes]
rs11758536	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12528750	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs12529063	0.83[CEU][hapmap]
rs1486608	0.90[EUR][1000 genomes]
rs1889276	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1889277	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs272244	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34273564	0.81[EUR][1000 genomes]
rs67041987	0.90[EUR][1000 genomes]
rs6912835	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6918162	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72938847	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7743293	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7754979	0.90[EUR][1000 genomes]
rs7775155	0.89[EUR][1000 genomes]
rs9446440	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9446441	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830686	chr6:72336896-72534267	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1547046	RIMS1	cis	Muscle Skeletal	GTEx
rs1547046	RIMS1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72372000-72375400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:72372000-72383200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:72375000-72375200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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