Variant report

Variant	rs6912835
Chromosome Location	chr6:72352079-72352080
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11751413	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11755205	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11756168	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11758536	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12528750	0.85[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs12529063	0.86[CEU][hapmap];0.83[JPT][hapmap]
rs1407200	0.90[CHB][hapmap]
rs1486608	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1547046	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1889276	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1889277	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs272244	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34273564	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67041987	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6918162	0.80[AMR][1000 genomes]
rs72938847	0.88[EUR][1000 genomes]
rs7743293	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7754979	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7775155	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830686	chr6:72336896-72534267	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6912835	RIMS1	cis	Muscle Skeletal	GTEx
rs6912835	RIMS1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72351400-72352400	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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