Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:98808145..98812472-chr9:98813018..98816202,3	MCF-7	breast:
2	chr9:98814315..98817027-chr9:98823230..98826158,2	MCF-7	breast:
3	chr9:98812221..98816024-chr9:98817583..98820363,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10819780	0.96[ASN][1000 genomes]
rs10989088	1.00[ASN][1000 genomes]
rs1547203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4592147	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029255	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7048174	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs734631	1.00[ASN][1000 genomes]
rs927968	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv1809137	chr9:98798752-98823646	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv982606	chr9:98814728-98823757	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98810200-98823400	Weak transcription	Right Atrium	heart
2	chr9:98810200-98827200	Weak transcription	Aorta	Aorta
3	chr9:98811000-98815400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:98811200-98815600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:98812200-98829600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:98812400-98818200	Weak transcription	Fetal Stomach	stomach
7	chr9:98812600-98818200	Weak transcription	Esophagus	oesophagus
8	chr9:98812800-98816000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:98812800-98818200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:98812800-98829400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:98813000-98818200	Weak transcription	Gastric	stomach
12	chr9:98813400-98815400	Weak transcription	Pancreas	Pancrea
13	chr9:98813400-98818200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:98814600-98815400	Enhancers	Fetal Brain Female	brain
15	chr9:98814600-98815600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:98814800-98815200	Enhancers	Fetal Brain Male	brain
17	chr9:98814800-98815600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:98815000-98815400	Enhancers	Fetal Kidney	kidney
19	chr9:98815000-98815400	Enhancers	Fetal Lung	lung
20	chr9:98815000-98815400	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr9:98815000-98816000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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