Variant report

Variant	rs7048174
Chromosome Location	chr9:98812552-98812553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98812221..98816024-chr9:98817583..98820363,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10819780	0.93[ASN][1000 genomes]
rs10989088	0.97[ASN][1000 genomes]
rs1547203	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1547204	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4592147	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7029255	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs734631	0.97[ASN][1000 genomes]
rs927968	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv1809137	chr9:98798752-98823646	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98809000-98813200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:98809400-98813200	Enhancers	Fetal Lung	lung
3	chr9:98810200-98823400	Weak transcription	Right Atrium	heart
4	chr9:98810200-98827200	Weak transcription	Aorta	Aorta
5	chr9:98810800-98813200	Enhancers	Brain Angular Gyrus	brain
6	chr9:98811000-98812800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:98811000-98815400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:98811200-98813000	Enhancers	Stomach Mucosa	stomach
9	chr9:98811200-98813400	Enhancers	Pancreas	Pancrea
10	chr9:98811200-98815600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:98811600-98812600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:98811800-98812600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr9:98811800-98812800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:98811800-98812800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:98812000-98812600	Flanking Active TSS	Brain Anterior Caudate	brain
16	chr9:98812000-98813600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr9:98812000-98815000	Weak transcription	Fetal Kidney	kidney
18	chr9:98812200-98812600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:98812200-98812600	Flanking Active TSS	Brain Substantia Nigra	brain
20	chr9:98812200-98812600	Enhancers	Esophagus	oesophagus
21	chr9:98812200-98812800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr9:98812200-98813000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:98812200-98813000	Enhancers	Gastric	stomach
24	chr9:98812200-98813200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:98812200-98829600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:98812400-98812600	Enhancers	H1 Cell Line	embryonic stem cell
27	chr9:98812400-98812600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:98812400-98812600	Enhancers	Brain Hippocampus Middle	brain
29	chr9:98812400-98813000	Enhancers	Brain Cingulate Gyrus	brain
30	chr9:98812400-98813400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:98812400-98818200	Weak transcription	Fetal Stomach	stomach

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