Variant report

Variant	rs1547424
Chromosome Location	chr22:29259293-29259294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12159764	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs132550	0.86[YRI][hapmap]
rs16986714	0.81[ASN][1000 genomes]
rs1894590	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2269575	0.82[ASN][1000 genomes]
rs4484131	0.89[ASN][1000 genomes]
rs4645087	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs5752797	0.84[YRI][hapmap]
rs59954406	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs5997400	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs5997403	0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs5997404	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6005875	0.80[ASN][1000 genomes]
rs6005878	0.80[ASN][1000 genomes]
rs6005879	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs6005893	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6005905	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6005906	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6005907	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6005918	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6005920	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6519764	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7284322	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7290019	0.80[ASN][1000 genomes]
rs7290679	0.80[ASN][1000 genomes]
rs7290958	0.80[ASN][1000 genomes]
rs7291783	0.93[ASN][1000 genomes]
rs73388819	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73388827	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73388828	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73388838	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73388841	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73388872	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9941965	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29252400-29261000	Weak transcription	Fetal Intestine Small	intestine
2	chr22:29255600-29260200	Weak transcription	Liver	Liver
3	chr22:29258800-29260400	Enhancers	HepG2	liver

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