Variant report

Variant	rs59954406
Chromosome Location	chr22:29247801-29247802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29239636..29243251-chr22:29245556..29248104,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12159764	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1547424	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16986714	0.88[ASN][1000 genomes]
rs1894590	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2269575	0.89[ASN][1000 genomes]
rs41281601	0.86[ASN][1000 genomes]
rs4484131	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4645087	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57652775	0.86[ASN][1000 genomes]
rs5997399	0.86[ASN][1000 genomes]
rs5997400	0.86[ASN][1000 genomes]
rs5997403	0.87[ASN][1000 genomes]
rs5997404	0.88[ASN][1000 genomes]
rs6005875	0.87[ASN][1000 genomes]
rs6005876	0.83[ASN][1000 genomes]
rs6005878	0.87[ASN][1000 genomes]
rs6005879	0.87[ASN][1000 genomes]
rs6005893	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6005900	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6005905	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6005906	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6005907	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6005918	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6005920	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6005922	0.81[AMR][1000 genomes]
rs60513698	0.86[ASN][1000 genomes]
rs6519764	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7284322	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7290019	0.87[ASN][1000 genomes]
rs7290679	0.87[ASN][1000 genomes]
rs7290958	0.87[ASN][1000 genomes]
rs7291783	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73388819	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73388827	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73388828	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73388838	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73388841	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73388872	0.83[EUR][1000 genomes]
rs73399615	0.84[ASN][1000 genomes]
rs73399621	0.86[ASN][1000 genomes]
rs9941965	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29226000-29248800	Weak transcription	Primary T cells from cord blood	blood
2	chr22:29234000-29251600	Weak transcription	Fetal Lung	lung
3	chr22:29243200-29249800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr22:29244800-29251400	Weak transcription	Fetal Intestine Small	intestine
5	chr22:29244800-29251800	Weak transcription	Fetal Stomach	stomach
6	chr22:29246000-29252000	Weak transcription	Ovary	ovary
7	chr22:29246200-29251600	Weak transcription	Liver	Liver
8	chr22:29246400-29251800	Weak transcription	Pancreas	Pancrea

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