Variant report

Variant	rs1549175
Chromosome Location	chr5:106532793-106532794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10043242	0.80[ASN][1000 genomes]
rs10060196	0.92[ASN][1000 genomes]
rs1030172	0.80[ASN][1000 genomes]
rs1030173	0.80[ASN][1000 genomes]
rs1030174	0.80[ASN][1000 genomes]
rs10479394	0.87[ASN][1000 genomes]
rs10515368	0.83[ASN][1000 genomes]
rs11242626	0.86[ASN][1000 genomes]
rs11242632	0.80[ASN][1000 genomes]
rs11949192	0.86[ASN][1000 genomes]
rs11960038	0.87[ASN][1000 genomes]
rs12522490	0.94[ASN][1000 genomes]
rs12522515	0.94[ASN][1000 genomes]
rs1345636	0.93[ASN][1000 genomes]
rs1345637	0.99[ASN][1000 genomes]
rs17386596	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs1990908	0.84[ASN][1000 genomes]
rs2161234	0.81[ASN][1000 genomes]
rs2410935	0.86[ASN][1000 genomes]
rs2410938	0.87[ASN][1000 genomes]
rs2410939	0.89[ASN][1000 genomes]
rs2410940	0.91[ASN][1000 genomes]
rs2410941	0.85[ASN][1000 genomes]
rs2410943	0.92[ASN][1000 genomes]
rs2410945	0.92[ASN][1000 genomes]
rs2410946	0.90[ASN][1000 genomes]
rs2410947	0.92[ASN][1000 genomes]
rs2410948	0.92[ASN][1000 genomes]
rs2410949	0.92[ASN][1000 genomes]
rs2410952	0.91[ASN][1000 genomes]
rs4143065	0.85[ASN][1000 genomes]
rs4245993	0.92[ASN][1000 genomes]
rs4429838	0.87[ASN][1000 genomes]
rs4524495	0.83[ASN][1000 genomes]
rs4535439	0.82[ASN][1000 genomes]
rs4557390	0.87[ASN][1000 genomes]
rs4631165	0.91[ASN][1000 genomes]
rs4637535	0.92[ASN][1000 genomes]
rs4957530	0.90[ASN][1000 genomes]
rs4957685	0.87[ASN][1000 genomes]
rs4957690	0.93[ASN][1000 genomes]
rs55689542	0.95[ASN][1000 genomes]
rs58196349	0.84[ASN][1000 genomes]
rs6596717	0.90[ASN][1000 genomes]
rs6596719	0.91[ASN][1000 genomes]
rs6596720	0.92[ASN][1000 genomes]
rs6596721	0.92[ASN][1000 genomes]
rs6596722	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6862498	0.83[ASN][1000 genomes]
rs6864971	0.87[ASN][1000 genomes]
rs6866458	0.87[ASN][1000 genomes]
rs6870023	0.88[ASN][1000 genomes]
rs6871050	0.94[ASN][1000 genomes]
rs6871532	0.92[ASN][1000 genomes]
rs6878038	0.83[ASN][1000 genomes]
rs6884885	0.88[ASN][1000 genomes]
rs6885021	0.90[ASN][1000 genomes]
rs6887291	0.87[ASN][1000 genomes]
rs6888773	0.85[ASN][1000 genomes]
rs6892104	0.94[ASN][1000 genomes]
rs7706390	0.92[ASN][1000 genomes]
rs7710297	0.94[ASN][1000 genomes]
rs7710569	0.85[ASN][1000 genomes]
rs7710595	0.84[ASN][1000 genomes]
rs7733658	0.93[ASN][1000 genomes]
rs7736860	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2752056	chr5:106422649-106563101	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv2758011	chr5:106491726-106551811	Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2759368	chr5:106491726-106551811	Enhancers Weak transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv882680	chr5:106493350-106573961	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv882681	chr5:106508913-106573961	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106532000-106533000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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